Ensembl에서 제공하는 Fungi의 gtf 정보를 사용하여 Summary 해보았습니다.
2주전부터 올릴려고 하고 있었는데 bug 및 계산 착오로 인해서 몇번 수정하느라 늦었습니다. 조만간 업데이트 할 예정입니다. :)
Name
(Ensembl)
|
Total Gene
|
Exon / Gene
|
Total Transcript
|
Exon
(bp)
|
Intron
(bp)
|
CDS
(bp)
|
||||||
Max
|
Median
|
Min
|
Max
|
Median
|
Min
|
Max
|
Median
|
Min
|
||||
Ashbya
gossypii (ASM9102v1)
|
5189
|
1.053
|
5189
|
14700
|
1098
|
1
|
666
|
61
|
1
|
14697
|
1215.0
|
75
|
Aspergillus
clavatus (CADRE)
|
9452
|
3.001
|
9452
|
14778
|
250
|
2
|
2397
|
63
|
7
|
24606
|
1239.0
|
126
|
Aspergillus
flavus (JCVI-afl1-v2.0)
|
13875
|
2.776
|
13875
|
14742
|
258
|
3
|
8254
|
62
|
8
|
23289
|
1056.0
|
147
|
Aspergillus
fumigatusa1163 (CADRE)
|
10160
|
2.886
|
10160
|
14778
|
267
|
2
|
2678
|
61
|
8
|
24780
|
1218.0
|
63
|
Aspergillus
fumigatus (CADRE)
|
9898
|
2.887
|
9898
|
25548
|
272
|
2
|
3092
|
60
|
1
|
25545
|
1245.0
|
63
|
Aspergillus
nidulans (ASM14920v1)
|
10827
|
3.299
|
10827
|
18015
|
245
|
1
|
3570
|
61
|
1
|
21642
|
1236.0
|
27
|
Aspergillus
niger (CADRE)
|
14445
|
3.523
|
14445
|
13734
|
175
|
1
|
2702
|
69
|
1
|
21105
|
1086.0
|
30
|
Aspergillus
oryzae (CADRE2)
|
12388
|
2.885
|
12388
|
14742
|
248
|
2
|
2753
|
62
|
1
|
20655
|
1114.5
|
300
|
Aspergillus
terreus (CADRE)
|
10601
|
3.142
|
10601
|
13746
|
258
|
1
|
1425575
|
59
|
14
|
17526
|
1260.0
|
147
|
Botryotinia
fuckeliana (BotFuc Aug2005)
|
16727
|
2.604
|
16727
|
12278
|
189
|
1
|
7371
|
75
|
22
|
20424
|
744.0
|
87
|
Fusarium
oxysporum (FO2)
|
18066
|
2.670
|
18066
|
13941
| 286 |
1
|
2370
|
59
|
4
|
22593
|
1014.0
|
3
|
Gaeumannomyces
graminis (Gae graminis V2)
|
14771
|
2.649
|
14963
|
16454
|
364
|
1
|
9098
|
88
|
4
|
19899
|
1041.0
|
96
|
Gibberella
moniliformis (ASM14955v1)
|
14602
|
2.730
|
14621
|
22425
|
300
|
1
|
989
|
58
|
22
|
22647
|
1056.0
|
84
|
Gibberella
zeae (ASM24013v2)
|
13696
|
2.767
|
13697
|
29066
|
280
|
1
|
975
|
56
|
1
|
33591
|
1098.0
|
87
|
Glomerella
graminicola (GCA 000149035.1)
|
12436
|
2.685
|
12436
|
26808
|
276
|
1
|
2183
|
64
|
10
|
26805
|
1158.0
|
93
|
Komagataella
pastoris (GCA 000027005.1)
|
5228
|
1.111
|
5228
|
14853
|
1053
|
2
|
903
|
63
|
10
|
14850
|
1188.0
|
135
|
Leptosphaeria
maculans (ASM23037v1)
|
12765
|
2.781
|
12765
|
20704
|
215
|
3
|
5775
|
64
|
40
|
29229
|
999.0
|
99
|
Magnaporthe
oryzae (MG8)
|
13218
|
2.726
|
13382
|
18290
|
361
|
3
|
2120
|
89
|
5
|
19623
|
1083.0
|
102
|
Magnaporthe
poae (Mag poae ATCC 64411 V1)
|
12389
|
2.720
|
12555
|
14426
|
407
|
2
|
2101
|
88
|
21
|
18789
|
1005.0
|
93
|
Melampsora
laricipopulina (GCA 000204055.1)
|
16828
|
4.739
|
16828
|
16603
|
150
|
1
|
35273
|
80
|
10
|
15816
|
900.0
|
102
|
Nectria
haematococca (v2.0)
|
16092
|
3.031
|
16092
|
22950
|
281
|
1
|
8864
|
55
|
11
|
22947
|
1233.0
|
147
|
Neosartorya
fischeri (CADRE)
|
10805
|
2.912
|
10805
|
14781
|
261
|
2
|
1506
|
59
|
8
|
18807
|
1221.0
|
90
|
Neurospora
crassa (ASM18292v1)
|
10413
|
2.644
|
10432
|
15030
|
260
|
1
|
1274
|
85
|
32
|
32460
|
1212.0
|
87
|
Phaeosphaeria
nodorum (ASM14691v1)
|
12678
|
2.626
|
12678
|
18212
|
295
|
1
|
1744
|
56
|
14
|
21135
|
1044.0
|
63
|
Puccinia
graminis (ASM14992v1)
|
16481
|
4.293
|
16660
|
5473
|
176
|
1
|
1700
|
86
|
21
|
15642
|
924.0
|
87
|
Puccinia
triticina (ASM15152v1)
|
13330
|
3.859
|
13330
|
8664
|
168
|
1
|
3818
|
83
|
15
|
14283
|
912.0
|
147
|
Pyrenophora
teres (GCA 000166005.1)
|
11958
|
2.484
|
11958
|
9963
|
310
|
5
|
5050
|
54
|
21
|
29457
|
1143.0
|
150
|
Pyrenophora
triticirepentis (GCA 000149985.1)
|
12387
|
2.638
|
12387
|
14088
|
303
|
3
|
2108
|
57
|
23
|
29079
|
1107.0
|
117
|
Saccharomyces
cerevisiae (SacCer Apr2011)
|
7126
|
1.060
|
7126
|
14733
|
951
|
1
|
2483
|
100
|
1
|
14730
|
1075.5
|
48
|
Schizosaccharomyces
pombe (ASM294v1)
|
7018
|
1.764
|
7019
|
14362
|
565
|
2
|
2526
|
56
|
1
|
14772
|
1134.0
|
72
|
Sclerotinia
sclerotiorum (ASM14694v1)
|
10413
|
2.756
|
10413
|
17212
|
183
|
1
|
1494
|
79
|
24
|
20313
|
819.0
|
84
|
Sporisorium
reilianum (GCA 000230245.1)
|
6803
|
1.452
|
6803
|
15883
|
843
|
1
|
2252
|
87
|
1
|
16272
|
1473.0
|
75
|
Trichoderma
virens (ASM17099v1)
|
12698
|
2.865
|
12704
|
61919
|
297
|
2
|
9208
|
68
|
10
|
62673
|
1140.0
|
132
|
Tuber
melanosporum (ASM15164v1)
|
7727
|
3.786
|
7727
|
25158
|
272.5
|
6
|
31660
|
63
|
9
|
28635
|
1077.0
|
30
|
Ustilago
maydis (UM1)
|
6690
|
1.732
|
6690
|
16296
|
549
|
1
|
1122
|
95
|
19
|
16293
|
1503.0
|
60
|
Zymoseptoria
tritici (MG2)
|
11075
|
2.591
|
11075
|
12888
|
298
|
2
|
42135
|
62
|
11
|
13839
|
1068.0
|
147
|
댓글 없음:
댓글 쓰기