레이블이 Ensembl인 게시물을 표시합니다. 모든 게시물 표시
레이블이 Ensembl인 게시물을 표시합니다. 모든 게시물 표시

화요일, 2월 19, 2013

Ensembl Fungi gtf Summary



Ensembl에서 제공하는 Fungi의 gtf 정보를 사용하여 Summary 해보았습니다.

2주전부터 올릴려고 하고 있었는데 bug 및 계산 착오로 인해서 몇번 수정하느라 늦었습니다. 조만간 업데이트 할 예정입니다. :)

Name (Ensembl)
Total Gene
Exon / Gene
Total Transcript
Exon (bp)
Intron (bp)
CDS (bp)
Max
Median
Min
Max
Median
Min
Max
Median
Min
Ashbya gossypii (ASM9102v1)
5189
1.053
5189
14700
1098
1
666
61
1
14697
1215.0
75
Aspergillus clavatus (CADRE)
9452
3.001
9452
14778
250
2
2397
63
7
24606
1239.0
126
Aspergillus flavus (JCVI-afl1-v2.0)
13875
2.776
13875
14742
258
3
8254
62
8
23289
1056.0
147
Aspergillus fumigatusa1163 (CADRE)
10160
2.886
10160
14778
267
2
2678
61
8
24780
1218.0
63
Aspergillus fumigatus (CADRE)
9898
2.887
9898
25548
272
2
3092
60
1
25545
1245.0
63
Aspergillus nidulans (ASM14920v1)
10827
3.299
10827
18015
245
1
3570
61
1
21642
1236.0
27
Aspergillus niger (CADRE)
14445
3.523
14445
13734
175
1
2702
69
1
21105
1086.0
30
Aspergillus oryzae (CADRE2)
12388
2.885
12388
14742
248
2
2753
62
1
20655
1114.5
300
Aspergillus terreus (CADRE)
10601
3.142
10601
13746
258
1
1425575
59
14
17526
1260.0
147
Botryotinia fuckeliana (BotFuc Aug2005)
16727
2.604
16727
12278
189
1
7371
75
22
20424
744.0
87
Fusarium oxysporum (FO2)
18066
2.670
18066
13941
286
1
2370
59
4
22593
1014.0
3
Gaeumannomyces graminis (Gae graminis V2)
14771
2.649
14963
16454
364
1
9098
88
4
19899
1041.0
96
Gibberella moniliformis (ASM14955v1)
14602
2.730
14621
22425
300
1
989
58
22
22647
1056.0
84
Gibberella zeae (ASM24013v2)
13696
2.767
13697
29066
280
1
975
56
1
33591
1098.0
87
Glomerella graminicola (GCA 000149035.1)
12436
2.685
12436
26808
276
1
2183
64
10
26805
1158.0
93
Komagataella pastoris (GCA 000027005.1)
5228
1.111
5228
14853
1053
2
903
63
10
14850
1188.0
135
Leptosphaeria maculans (ASM23037v1)
12765
2.781
12765
20704
215
3
5775
64
40
29229
999.0
99
Magnaporthe oryzae (MG8)
13218
2.726
13382
18290
361
3
2120
89
5
19623
1083.0
102
Magnaporthe poae (Mag poae ATCC 64411 V1)
12389
2.720
12555
14426
407
2
2101
88
21
18789
1005.0
93
Melampsora laricipopulina (GCA 000204055.1)
16828
4.739
16828
16603
150
1
35273
80
10
15816
900.0
102
Nectria haematococca (v2.0)
16092
3.031
16092
22950
281
1
8864
55
11
22947
1233.0
147
Neosartorya fischeri (CADRE)
10805
2.912
10805
14781
261
2
1506
59
8
18807
1221.0
90
Neurospora crassa (ASM18292v1)
10413
2.644
10432
15030
260
1
1274
85
32
32460
1212.0
87
Phaeosphaeria nodorum (ASM14691v1)
12678
2.626
12678
18212
295
1
1744
56
14
21135
1044.0
63
Puccinia graminis (ASM14992v1)
16481
4.293
16660
5473
176
1
1700
86
21
15642
924.0
87
Puccinia triticina (ASM15152v1)
13330
3.859
13330
8664
168
1
3818
83
15
14283
912.0
147
Pyrenophora teres (GCA 000166005.1)
11958
2.484
11958
9963
310
5
5050
54
21
29457
1143.0
150
Pyrenophora triticirepentis (GCA 000149985.1)
12387
2.638
12387
14088
303
3
2108
57
23
29079
1107.0
117
Saccharomyces cerevisiae (SacCer Apr2011)
7126
1.060
7126
14733
951
1
2483
100
1
14730
1075.5
48
Schizosaccharomyces pombe (ASM294v1)
7018
1.764
7019
14362
565
2
2526
56
1
14772
1134.0
72
Sclerotinia sclerotiorum (ASM14694v1)
10413
2.756
10413
17212
183
1
1494
79
24
20313
819.0
84
Sporisorium reilianum (GCA 000230245.1)
6803
1.452
6803
15883
843
1
2252
87
1
16272
1473.0
75
Trichoderma virens (ASM17099v1)
12698
2.865
12704
61919
297
2
9208
68
10
62673
1140.0
132
Tuber melanosporum (ASM15164v1)
7727
3.786
7727
25158
272.5
6
31660
63
9
28635
1077.0
30
Ustilago maydis (UM1)
6690
1.732
6690
16296
549
1
1122
95
19
16293
1503.0
60
Zymoseptoria tritici (MG2)
11075
2.591
11075
12888
298
2
42135
62
11
13839
1068.0
147