Publications


Press:

- Draft Genome Sequence of the Fungus Associated with Oak Wilt Mortality in South Korea, Raffaelea quercus-mongolicae KACC44405. Jeon J, Kim KT, Song H, Lee GW, Cheong K, Kim H, Choi G, Lee YH, Stewart JE, Klopfenstein NB, and Kim MS Genome Announc. August 2017 5:e00797-17; doi:10.1128/genomeA.00797-17

Whole-genome de novo sequencing, combined with RNA-Seq analysis, reveals unique genome and physiological features of the amylolytic yeast Saccharomycopsis fibuligera and its interspecies hybrid. Choo JH, Hong CP, Lim JY, Seo JA, Kim YS, Lee DW, Park SG, Lee GW, Carroll E, Lee YW and Kang HA. Biotechnology for Biofuels. 2016 Nov 11;9:246. doi: 10.1186/s13068-016-0653-4.

Whole genome de novo sequencing and genome annotation of the world popular cultivated edible mushroom, Lentinula edodes. Shim D, Park SG, Kim K, Bae W, Lee GW, Ha BS, Ro HS, Kim M, Ryoo R, Rhee SK, Nou IS, Koo CD, Hong CP, Ryu H. J Biotechnol. 2016 Feb 26;223:24-25. doi: 10.1016/j.jbiotec.2016.02.032.

- Genome-Wide Analysis of Hypoxia-Responsive Genes in the Rice Blast Fungus, Magnaporthe oryzae. Choi J, Chung H, Lee GW, Koh SK, Chae SK, Lee YH (2015)  PLoS ONE 10(8): e0134939. doi:10.1371/journal.pone.0134939

- Genome-wide profiling of DNA methylation provides insights into epigenetic regulation of fungal development in a plant pathogenic fungus, Magnaporthe oryzae. Jeon J, Choi J, Lee GW, Park SY, Huh A, Dean RA, Lee YH. Sci Rep. 2015 Feb 24;5:8567. doi: 10.1038/srep08567.

- Draft Genome Sequence of Endocarpon pusillum Strain KoLRILF000583. Park SY, Choi J, Lee GW, Park CH, Kim JA, Oh SO, Lee YH, Hur JS. Genome Announc. 2014 May 22.

dbCRY: a Web-based comparative and evolutionary genomics platform for blue-light receptors. Kim, YM, Choi, J., Lee, HY, Lee, GW, Lee, YH, Choi, D. Database 2014: bau037

- Draft Genome Sequence of Umbilicaria muehlenbergii KoLRILF000956, a Lichen-Forming Fungus Amenable to Genetic Manipulation. Park SY, Choi J, Lee GW, Jeong MH, Kim JA, Oh SO, Lee YH, Hur JS. Genome Announc. 2014 Apr 24.

- Draft Genome Sequence of Lichen-Forming Fungus Cladonia metacorallifera Strain KoLRI002260. Partk SY, Choi J, Lee GW, Kim JA, Oh SO, Jeong MH, Yu NH, Kim S, Lee YH, Hur JS. Genome Announc. 2014 Feb 13.

- Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species. Kim S, Park M, Yeom SI, Kim YM, Lee JM, Lee HA, Seo E, Choi J, Cheong K, Kim KT, Jung K, Lee GW, Oh SK, Bae C, Kim SB, Lee HY, Kim SY, Kim MS, Kang BC, Jo YD, Yang HB, Jeong HJ, Kang WH, et al. Nat Genet. 2014 Jan 19.

The global response regulator ExpA controls virulence gene expression through RsmA-mediated and RsmA-independent pathways in Pectobacterium wasabiae SCC3193. Broberg M, Lee GW, Nykyri J, Lee YH, Pirhonen M and Palva ET. Appl. Environ. Microbiol. doi:10.1128/AEM.03829-13

Global expression profiling of transcription factor genes provides new insights into  pathogenicity and stress responses in the rice blast fungus. Park SY, Choi J, Lim SE, Lee GW, Park J, et al. PLoS Pathog 2013 Jun; 9: e1003350

- Experimental Evolution Reveals Genome-Wide Spectrum and Dynamics of Mutations in the Rice Blast Fungus, Magnaporthe oryzae. Jeon J, Choi J, Lee GW, Dean RA, Lee YH. PLoS ONE. 2013 8:e65416

- CFGP 2.0: a versatile web-based platform for supporting comparative and evolutionary genomics of fungi and Oomycetes. Choi J, Cheong K, Jung K, Jeon J, Lee GW, Kang S, Kim S, Lee YW and Lee YH, Nucl. Acids Res. 2013 41: D714-D719.

- Remodeling of global transcription patterns of Cryptococcus neoformans genes mediated by the stress-activated HOG signaling pathways. Ko YJ, Yu YM, Kim GB, Lee GW, Maeng PJ, Kim S, Floyd A, Heitman J, Bahn YS, Eukaryot Cell. 2009 8:1197-217.

- Genome data mining for everyone. Lee GW, Kim S, BMB Rep. 2008 41:757-64





Conference & Symposium:


 - 농림축산식품 생물정보교육, 2014
    미생물 de-novo assembly 실습

 - Colloquium on Korean Lichen Research Institute, 2014
    우리는 왜 RNA-seq을 사용해서 연구를 해야 하는가?

 - Symposium on Photosynthesis and Environment, 2005
    List of genes that are up- or down- regulated by high light, low oxygen and high oxygen stresses in rice. Lee Gir Won, Park PhumBum


Ph. D. thesis:
- Genome-wide analysis of temporal gene expression in Magnaporthe oryzae during rice infection (2013, Soongsil University)


Master thesis:
 -  Development of system for gene expression analysis in soybean (Glycine max) by expressed sequence tags (2006, The University of Suwon)






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