Tuesday, February 19, 2013

Ensembl Fungi gtf Summary



Ensembl에서 제공하는 Fungi의 gtf 정보를 사용하여 Summary 해보았습니다.

2주전부터 올릴려고 하고 있었는데 bug 및 계산 착오로 인해서 몇번 수정하느라 늦었습니다. 조만간 업데이트 할 예정입니다. :)

Name (Ensembl)
Total Gene
Exon / Gene
Total Transcript
Exon (bp)
Intron (bp)
CDS (bp)
Max
Median
Min
Max
Median
Min
Max
Median
Min
Ashbya gossypii (ASM9102v1)
5189
1.053
5189
14700
1098
1
666
61
1
14697
1215.0
75
Aspergillus clavatus (CADRE)
9452
3.001
9452
14778
250
2
2397
63
7
24606
1239.0
126
Aspergillus flavus (JCVI-afl1-v2.0)
13875
2.776
13875
14742
258
3
8254
62
8
23289
1056.0
147
Aspergillus fumigatusa1163 (CADRE)
10160
2.886
10160
14778
267
2
2678
61
8
24780
1218.0
63
Aspergillus fumigatus (CADRE)
9898
2.887
9898
25548
272
2
3092
60
1
25545
1245.0
63
Aspergillus nidulans (ASM14920v1)
10827
3.299
10827
18015
245
1
3570
61
1
21642
1236.0
27
Aspergillus niger (CADRE)
14445
3.523
14445
13734
175
1
2702
69
1
21105
1086.0
30
Aspergillus oryzae (CADRE2)
12388
2.885
12388
14742
248
2
2753
62
1
20655
1114.5
300
Aspergillus terreus (CADRE)
10601
3.142
10601
13746
258
1
1425575
59
14
17526
1260.0
147
Botryotinia fuckeliana (BotFuc Aug2005)
16727
2.604
16727
12278
189
1
7371
75
22
20424
744.0
87
Fusarium oxysporum (FO2)
18066
2.670
18066
13941
286
1
2370
59
4
22593
1014.0
3
Gaeumannomyces graminis (Gae graminis V2)
14771
2.649
14963
16454
364
1
9098
88
4
19899
1041.0
96
Gibberella moniliformis (ASM14955v1)
14602
2.730
14621
22425
300
1
989
58
22
22647
1056.0
84
Gibberella zeae (ASM24013v2)
13696
2.767
13697
29066
280
1
975
56
1
33591
1098.0
87
Glomerella graminicola (GCA 000149035.1)
12436
2.685
12436
26808
276
1
2183
64
10
26805
1158.0
93
Komagataella pastoris (GCA 000027005.1)
5228
1.111
5228
14853
1053
2
903
63
10
14850
1188.0
135
Leptosphaeria maculans (ASM23037v1)
12765
2.781
12765
20704
215
3
5775
64
40
29229
999.0
99
Magnaporthe oryzae (MG8)
13218
2.726
13382
18290
361
3
2120
89
5
19623
1083.0
102
Magnaporthe poae (Mag poae ATCC 64411 V1)
12389
2.720
12555
14426
407
2
2101
88
21
18789
1005.0
93
Melampsora laricipopulina (GCA 000204055.1)
16828
4.739
16828
16603
150
1
35273
80
10
15816
900.0
102
Nectria haematococca (v2.0)
16092
3.031
16092
22950
281
1
8864
55
11
22947
1233.0
147
Neosartorya fischeri (CADRE)
10805
2.912
10805
14781
261
2
1506
59
8
18807
1221.0
90
Neurospora crassa (ASM18292v1)
10413
2.644
10432
15030
260
1
1274
85
32
32460
1212.0
87
Phaeosphaeria nodorum (ASM14691v1)
12678
2.626
12678
18212
295
1
1744
56
14
21135
1044.0
63
Puccinia graminis (ASM14992v1)
16481
4.293
16660
5473
176
1
1700
86
21
15642
924.0
87
Puccinia triticina (ASM15152v1)
13330
3.859
13330
8664
168
1
3818
83
15
14283
912.0
147
Pyrenophora teres (GCA 000166005.1)
11958
2.484
11958
9963
310
5
5050
54
21
29457
1143.0
150
Pyrenophora triticirepentis (GCA 000149985.1)
12387
2.638
12387
14088
303
3
2108
57
23
29079
1107.0
117
Saccharomyces cerevisiae (SacCer Apr2011)
7126
1.060
7126
14733
951
1
2483
100
1
14730
1075.5
48
Schizosaccharomyces pombe (ASM294v1)
7018
1.764
7019
14362
565
2
2526
56
1
14772
1134.0
72
Sclerotinia sclerotiorum (ASM14694v1)
10413
2.756
10413
17212
183
1
1494
79
24
20313
819.0
84
Sporisorium reilianum (GCA 000230245.1)
6803
1.452
6803
15883
843
1
2252
87
1
16272
1473.0
75
Trichoderma virens (ASM17099v1)
12698
2.865
12704
61919
297
2
9208
68
10
62673
1140.0
132
Tuber melanosporum (ASM15164v1)
7727
3.786
7727
25158
272.5
6
31660
63
9
28635
1077.0
30
Ustilago maydis (UM1)
6690
1.732
6690
16296
549
1
1122
95
19
16293
1503.0
60
Zymoseptoria tritici (MG2)
11075
2.591
11075
12888
298
2
42135
62
11
13839
1068.0
147

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